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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
29
DNase-seq
Assay category
62
DNA binding
29
DNA accessibility
Target of assay
36
transcription factor
26
histone
26
histone modification
13
broad histone mark
13
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
50
November, 2017
24
June, 2019
13
August, 2017
3
October, 2019
1
November, 2020
Available data
1256
bam
1218
bigWig
749
bed narrowPeak
671
fastq
483
tsv
443
bigBed narrowPeak
130
tagAlign
91
bed broadPeak
91
bigBed broadPeak
54
bed bed3+
2
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
hic
Organism
91
Homo sapiens
Biosample type
tissue
45
cell line
45
primary cell
1
in vitro differentiated cells
Organ
46
liver
20
epithelium
11
brain
10
kidney
10
vasculature
7
connective tissue
6
blood vessel
3
heart
2
vein
1
eye
1
musculature of body
1
pancreas
Project
91
AMP
Genome assembly (visualization)
102
hg19
91
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
DNase-seq
cell line
HepG2
44
Panc1
1
primary cell
skeletal muscle myoblast
12
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
cardiac fibroblast
3
choroid plexus epithelial cell
2
1
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in vitro differentiated cells
adipocyte
1
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