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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
106
ChIP-seq
17
ATAC-seq
1
DNase-seq
Assay category
127
Transcription
106
DNA binding
18
DNA accessibility
Target of assay
66
histone
66
histone modification
35
narrow histone mark
35
transcription factor
30
broad histone mark
5
control
4
RNA binding protein
2
chromatin remodeller
Date released
84
May, 2021
49
August, 2017
31
February, 2018
30
August, 2021
24
December, 2017
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
251
bam
229
bigWig
127
tsv
114
bed narrowPeak
104
fastq
19
bed bed3+
18
tagAlign
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
251
Homo sapiens
Biosample type
1581
tissue
525
primary cell
251
in vitro differentiated cells
196
cell line
3
stem cell
Organ
54
connective tissue
21
embryo
20
epithelium
liver
2
pancreas
1
heart
Project
251
AMP
Genome assembly (visualization)
283
hg19
251
GRCh38
4
hg18
Lab
251
AMP-T2D consortium
Audit category:
99
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
liver
BIOSAMPLE
ASSAY
251 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
48
1
neural progenitor cell
7
13
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
13
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