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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
140
total RNA-seq
96
single cell RNA-seq
47
ATAC-seq
21
DNase-seq
1
Hi-C
1
small RNA-seq
Assay category
237
Transcription
198
DNA binding
68
DNA accessibility
1
3D chromatin structure
Target of assay
190
histone
190
histone modification
98
narrow histone mark
92
broad histone mark
8
RNA binding protein
8
transcription factor
3
control
1
chromatin remodeller
Date released
149
May, 2021
72
September, 2018
46
July, 2018
45
May, 2020
42
August, 2017
41
April, 2018
33
June, 2019
22
October, 2019
12
July, 2019
7
August, 2020
6
November, 2017
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
October, 2018
1
March, 2023
Available data
493
bam
488
bigWig
244
bed narrowPeak
237
tsv
226
fastq
98
tagAlign
90
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
24
bed bed3+
1
hic
Organism
504
Homo sapiens
Biosample type
1339
tissue
504
primary cell
464
cell line
211
in vitro differentiated cells
3
stem cell
Organ
225
epithelium
192
pancreas
connective tissue
28
kidney
22
vasculature
18
blood vessel
14
brain
12
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
313
AMP
180
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
594
hg19
504
GRCh38
Lab
313
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
26
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
504 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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