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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
902
total RNA-seq
26
ChIP-seq
16
ATAC-seq
16
WGBS
16
small RNA-seq
Assay category
918
Transcription
26
DNA binding
16
DNA accessibility
16
DNA methylation
Target of assay
18
transcription factor
5
histone
5
histone modification
4
narrow histone mark
3
control
1
RNA binding protein
1
broad histone mark
Date released
444
February, 2021
143
May, 2020
116
July, 2018
113
August, 2017
56
July, 2019
38
May, 2021
19
November, 2019
12
May, 2023
10
October, 2019
7
March, 2020
6
April, 2018
6
November, 2018
2
March, 2019
2
October, 2017
2
September, 2017
Available data
1703
bam
1672
bigWig
917
tsv
bed narrowPeak
555
bigBed narrowPeak
280
fastq
204
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
976
Homo sapiens
Biosample type
976
tissue
275
primary cell
137
in vitro differentiated cells
106
cell line
1
stem cell
Organ
469
connective tissue
411
adipose tissue
289
pancreas
153
liver
58
bone element
19
heart
13
brain
13
kidney
5
blood vessel
5
limb
5
musculature of body
5
vasculature
4
nerve
2
spleen
Project
976
AMP
Genome assembly (visualization)
978
hg19
976
GRCh38
Lab
962
AMP-T2D consortium
11
Katalin Susztak, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
21
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
976 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
tissue
adipose tissue
382
2
islet of Langerhans
266
11
3
liver
147
1
1
bone tissue
58
white adipose tissue
12
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