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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
39
ATAC-seq
27
DNase-seq
12
total RNA-seq
6
WGBS
1
small RNA-seq
Assay category
66
DNA accessibility
66
DNA binding
13
Transcription
6
DNA methylation
Target of assay
59
histone
59
histone modification
37
broad histone mark
22
narrow histone mark
7
transcription factor
5
RNA binding protein
Date released
46
April, 2019
35
February, 2023
27
June, 2019
17
July, 2019
15
May, 2019
7
October, 2019
2
March, 2020
2
May, 2021
Available data
132
bed narrowPeak
116
bam
116
bigWig
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
13
tsv
6
bed bedMethyl
6
bigBed bedMethyl
Organism
151
Homo sapiens
Biosample type
151
tissue
64
cell line
10
primary cell
1
in vitro differentiated cells
Organ
480
connective tissue
422
adipose tissue
386
pancreas
238
liver
203
brain
165
kidney
151
heart
105
blood vessel
105
vasculature
96
limb
66
bone element
62
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
151
AMP
Genome assembly (visualization)
151
GRCh38
113
hg19
Lab
151
AMP-T2D consortium
BIOSAMPLE
ASSAY
151 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
small RNA-seq
tissue
coronary artery
3
36
2
heart left ventricle
28
2
3
3
2
heart
12
18
4
1
1
heart right ventricle
11
1
1
2
right atrium auricular region
7
1
2
2
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