Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
64
ChIP-seq
2
ATAC-seq
2
WGBS
1
DNase-seq
Assay category
89
Transcription
64
DNA binding
3
DNA accessibility
2
DNA methylation
Target of assay
40
histone modification
39
histone
23
transcription factor
21
broad histone mark
18
narrow histone mark
2
RNA binding protein
1
control
Date released
452
February, 2021
163
June, 2019
162
May, 2020
161
October, 2019
158
August, 2017
116
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
61
July, 2019
57
November, 2017
45
October, 2018
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
22
November, 2018
14
October, 2017
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
158
bam
158
fastq
157
bigWig
89
tsv
45
bed narrowPeak
26
bed bed3+
21
bigBed narrowPeak
6
bed broadPeak
6
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
Organism
152
Homo sapiens
Biosample type
158
tissue
49
in vitro differentiated cells
42
primary cell
Organ
123
pancreas
19
liver
16
adipose tissue
16
connective tissue
Project
158
AMP
Genome assembly (visualization)
180
hg19
158
GRCh38
Lab
158
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
158 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
tissue
islet of Langerhans
89
21
1
liver
18
pancreas
12
white adipose tissue
12
adipose tissue
1
2
right lobe of liver
1
subcutaneous adipose tissue
1
See all biosamples
Download