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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
ATAC-seq
23
Hi-C
19
RRBS
3
ChIP-seq
2
pCHi-C
1
total RNA-seq
Assay category
243
DNA accessibility
23
3D chromatin structure
19
DNA methylation
3
DNA binding
1
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
76
August, 2021
73
February, 2023
28
November, 2019
21
February, 2021
18
May, 2022
15
July, 2019
13
May, 2021
12
March, 2020
12
May, 2023
10
October, 2019
4
August, 2017
3
March, 2019
3
October, 2022
1
March, 2023
1
November, 2017
1
November, 2020
Available data
bigWig
3097
bam
1817
bed narrowPeak
1402
tsv
1042
bigBed narrowPeak
1032
fastq
321
bed broadPeak
285
bigBed broadPeak
279
tagAlign
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
hic
21
bedpe bed3+
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
291
Homo sapiens
Biosample type
215
tissue
32
in vitro differentiated cells
32
primary cell
12
cell line
Organ
80
kidney
49
pancreas
48
heart
47
vasculature
46
blood vessel
43
artery
28
eye
26
epithelium
14
connective tissue
12
bone element
12
skeleton
6
brain
6
limb
6
liver
5
musculature of body
3
adipose tissue
2
vein
1
pericardium
Project
287
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
188
GRCh38
179
hg19
Lab
189
AMP-T2D consortium
76
Katalin Susztak, Upenn
18
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Mark McCarthy, Oxford
Audit category:
20
inconsistent ontology term
4
audit script error
1
inconsistent replicate
files.file_type!
bed bed3+
bigWig
BIOSAMPLE
ASSAY
291 results
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Clear Filters
ATAC-seq
Hi-C
RRBS
ChIP-seq
pCHi-C
total RNA-seq
tissue
kidney
75
1
1
islet of Langerhans
39
2
1
coronary artery
35
retina
15
pigmented layer of retina
12
+ See 27 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
adipocyte
4
cardiomyocytes (cardiac muscle cell)
1
2
1
+ See 2 more…
primary cell
monocyte
13
endothelial cell of umbilical vein
2
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
cardiac fibroblast
1
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
1
HepG2
1
1
See all biosamples
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