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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
Assay category
42
DNA binding
Target of assay
23
histone
23
histone modification
19
transcription factor
14
narrow histone mark
12
chromatin remodeller
9
broad histone mark
5
RNA binding protein
1
recombinant protein
Date released
17
November, 2017
12
August, 2017
5
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
52
bam
52
bed narrowPeak
52
bigWig
52
fastq
29
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
bed bed3+
9
tagAlign
Organism
42
Homo sapiens
Biosample type
22
cell line
9
in vitro differentiated cells
6
tissue
5
primary cell
Organ
23
liver
9
pancreas
5
epithelium
2
connective tissue
2
embryo
Project
42
AMP
Genome assembly (visualization)
46
hg19
42
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
42
inconsistent control read length
7
inconsistent control run_type
3
inconsistent assembly
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
cell line
HepG2
22
in vitro differentiated cells
definitive endodermal cell
3
adipocyte
2
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
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