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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
902
total RNA-seq
550
ChIP-seq
177
DNase-seq
158
ATAC-seq
16
small RNA-seq
Assay category
918
Transcription
550
DNA binding
335
DNA accessibility
Target of assay
459
histone modification
458
histone
236
narrow histone mark
222
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
163
June, 2019
162
May, 2020
161
October, 2019
156
August, 2017
116
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
57
November, 2017
53
July, 2019
45
October, 2018
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
16
November, 2018
14
October, 2017
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1703
bam
1672
bigWig
917
tsv
843
bed narrowPeak
555
bigBed narrowPeak
280
fastq
204
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
116
tagAlign
64
xls
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1797
Homo sapiens
Biosample type
1803
tissue
536
primary cell
463
cell line
265
in vitro differentiated cells
3
stem cell
Organ
478
connective tissue
420
adipose tissue
382
pancreas
238
liver
203
brain
165
kidney
145
heart
104
blood vessel
104
vasculature
95
limb
66
bone element
62
artery
41
musculature of body
31
nerve
18
ureter
14
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1801
AMP
2
T1D
Genome assembly (visualization)
1803
GRCh38
1746
hg19
Lab
1725
AMP-T2D consortium
75
Katalin Susztak, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
1803 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
tissue
adipose tissue
382
1
islet of Langerhans
266
25
1
22
liver
147
75
2
1
kidney
20
13
75
bone tissue
58
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