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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
49
ATAC-seq
2
small RNA-seq
1
Hi-C
Assay category
252
Transcription
189
DNA binding
49
DNA accessibility
1
3D chromatin structure
Target of assay
184
histone
184
histone modification
94
narrow histone mark
90
broad histone mark
5
RNA binding protein
5
transcription factor
3
control
Date released
149
May, 2021
72
September, 2018
48
July, 2018
45
May, 2020
43
April, 2018
30
August, 2017
23
June, 2019
20
October, 2019
18
July, 2019
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
1
March, 2023
Available data
525
bam
519
bigWig
261
bed narrowPeak
252
tsv
229
fastq
105
bigBed narrowPeak
98
tagAlign
bed broadPeak
45
bigBed broadPeak
30
bed bed3+
1
bed bed3
1
hic
Organism
491
Homo sapiens
Biosample type
1628
tissue
491
primary cell
419
cell line
264
in vitro differentiated cells
3
stem cell
Organ
205
epithelium
192
pancreas
26
connective tissue
18
kidney
12
blood vessel
12
vasculature
10
musculature of body
10
vein
9
liver
7
heart
3
brain
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
300
AMP
180
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
586
hg19
491
GRCh38
Lab
300
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
33
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
491 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
Hi-C
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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