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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
ChIP-seq
100
single cell RNA-seq
54
total RNA-seq
39
ATAC-seq
2
small RNA-seq
Assay category
156
Transcription
105
DNA binding
39
DNA accessibility
Target of assay
100
histone
100
histone modification
54
narrow histone mark
46
broad histone mark
5
RNA binding protein
5
transcription factor
3
control
Date released
72
September, 2018
48
July, 2018
43
April, 2018
30
August, 2017
23
June, 2019
20
October, 2019
18
July, 2019
14
May, 2021
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
2
February, 2021
2
October, 2018
Available data
345
bam
329
bigWig
219
fastq
177
bed narrowPeak
156
tsv
105
bigBed narrowPeak
bed broadPeak
45
bigBed broadPeak
30
bed bed3+
14
tagAlign
1
bed bed3
Organism
300
Homo sapiens
Biosample type
1551
tissue
419
cell line
300
primary cell
264
in vitro differentiated cells
3
stem cell
Organ
195
epithelium
182
pancreas
26
connective tissue
18
kidney
12
blood vessel
12
vasculature
10
musculature of body
10
vein
9
liver
7
heart
3
brain
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
300
AMP
Genome assembly (visualization)
368
hg19
300
GRCh38
Lab
300
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
29
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
300 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
small RNA-seq
primary cell
pancreatic beta cell
7
12
10
7
pancreatic alpha cell
7
12
10
6
pancreatic ductal cell
13
10
4
4
pancreatic acinar cell
8
12
4
5
pancreatic endocrine cell
23
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