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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
226
ChIP-seq
Assay category
226
DNA binding
Target of assay
217
histone
217
histone modification
126
narrow histone mark
91
broad histone mark
9
transcription factor
Date released
89
May, 2021
45
November, 2017
40
October, 2019
19
May, 2020
16
August, 2021
6
August, 2017
6
October, 2017
5
February, 2021
Available data
2959
bam
2890
bigWig
1592
bed narrowPeak
1400
tsv
998
bigBed narrowPeak
951
fastq
282
bed broadPeak
bigBed broadPeak
258
bed bed3+
246
tagAlign
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
220
Homo sapiens
Biosample type
116
tissue
87
primary cell
18
in vitro differentiated cells
5
cell line
Organ
82
brain
22
liver
8
pancreas
5
epithelium
4
artery
4
blood vessel
4
heart
4
vasculature
1
pituitary gland
Project
142
AMP
84
T1D
Genome assembly (visualization)
226
GRCh38
216
hg19
Lab
142
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
226 results
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Clear Filters
ChIP-seq
tissue
liver
19
caudate nucleus
12
substantia nigra
12
layer of hippocampus
11
brain
6
+ See 40 more…
primary cell
monocyte
84
hepatocyte
3
in vitro differentiated cells
neural progenitor cell
13
cardiomyocytes
3
pancreatic PP cell
2
cell line
smooth muscle cell of the coronary artery
4
iPSC derived cell line
1
See all biosamples
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