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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
84
ChIP-seq
10
ATAC-seq
1
Hi-C
Assay category
96
Transcription
84
DNA binding
10
DNA accessibility
1
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
135
May, 2021
45
May, 2020
7
August, 2020
3
September, 2020
1
March, 2023
Available data
190
bigWig
180
bam
96
tsv
84
bed narrowPeak
84
tagAlign
10
fastq
1
hic
Organism
191
Homo sapiens
Biosample type
191
primary cell
4
cell line
2
tissue
Organ
10
epithelium
10
pancreas
Project
AMP
180
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
191
GRCh38
183
hg19
Lab
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
4
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
award.project!
AMP
BIOSAMPLE
ASSAY
191 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
primary cell
monocyte
53
84
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
regulatory T cell
2
chondrocytes
1
immature natural killer cell
1
myeloid dendritic cell
1
natural killer cell
1
plasma cell
1
plasmacytoid dendritic cell
1
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