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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
84
ChIP-seq
13
ATAC-seq
1
Hi-C
Assay category
96
Transcription
84
DNA binding
13
DNA accessibility
1
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
135
May, 2021
45
May, 2020
7
August, 2020
3
September, 2020
2
March, 2019
1
March, 2023
1
October, 2017
Available data
191
bigWig
180
bam
96
tsv
84
bed narrowPeak
84
tagAlign
11
fastq
1
bed broadPeak
1
hic
Organism
194
Homo sapiens
Biosample type
191
primary cell
3
tissue
Organ
13
pancreas
10
epithelium
Project
180
T1D
10
HPAP
3
AMP
1
ITG
Genome assembly (visualization)
287
hg19
194
GRCh38
Lab
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
194 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
primary cell
monocyte
53
84
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
CD8-positive, alpha-beta T cell
2
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tissue
islet of Langerhans
3
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