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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ATAC-seq
2
ChIP-seq
2
Hi-C
1
total RNA-seq
Assay category
113
DNA accessibility
2
3D chromatin structure
2
DNA binding
1
Transcription
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
64
August, 2021
35
February, 2023
12
May, 2023
3
October, 2019
2
March, 2019
1
March, 2023
1
October, 2017
Available data
bam
2880
bigWig
1592
bed narrowPeak
1400
tsv
998
bigBed narrowPeak
941
fastq
282
bed broadPeak
267
bigBed broadPeak
258
bed bed3+
246
tagAlign
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
118
Homo sapiens
Biosample type
116
tissue
1
cell line
1
primary cell
Organ
75
kidney
35
artery
35
blood vessel
35
heart
35
vasculature
4
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
117
AMP
1
ITG
Genome assembly (visualization)
212
hg19
118
GRCh38
5
hg18
Lab
75
Katalin Susztak, Upenn
39
AMP-T2D consortium
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
files.file_type!
bam
BIOSAMPLE
ASSAY
118 results
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ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
tissue
kidney
75
coronary artery
35
islet of Langerhans
3
adipose tissue
1
dorsal plus ventral thalamus
1
+ See 1 more…
cell line
Panc1
1
primary cell
chondrocytes
1
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