Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
96
total RNA-seq
88
ATAC-seq
Assay category
124
DNA binding
96
Transcription
88
DNA accessibility
Target of assay
119
histone
119
histone modification
64
broad histone mark
55
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
135
May, 2021
64
August, 2021
45
May, 2020
40
May, 2024
11
May, 2023
7
August, 2020
3
September, 2020
2
March, 2019
1
October, 2017
Available data
231
bigWig
188
bed narrowPeak
180
bam
96
tsv
84
tagAlign
64
xls
11
fastq
1
bed broadPeak
hic
Organism
308
Homo sapiens
Biosample type
190
primary cell
118
tissue
Organ
75
kidney
40
heart
13
pancreas
10
epithelium
Project
180
T1D
118
AMP
10
HPAP
Genome assembly (visualization)
308
GRCh38
282
hg19
Lab
AMP-T2D consortium
180
Kyle Gaulton, UCSD
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
month_released!
April, 2019
lab.title!
AMP-T2D consortium
files.file_type!
hic
BIOSAMPLE
ASSAY
308 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
primary cell
monocyte
84
53
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 22 more…
tissue
kidney
75
left cardiac atrium
40
islet of Langerhans
3
See all biosamples
Download