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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
82
ChIP-seq
17
ATAC-seq
1
DNase-seq
Assay category
127
Transcription
82
DNA binding
18
DNA accessibility
Target of assay
55
histone
55
histone modification
28
narrow histone mark
26
broad histone mark
26
transcription factor
4
RNA binding protein
2
chromatin remodeller
1
control
Date released
84
May, 2021
49
August, 2017
December, 2017
31
February, 2018
30
August, 2021
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
227
bam
209
bigWig
127
tsv
94
bed narrowPeak
80
fastq
18
tagAlign
7
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
227
Homo sapiens
Biosample type
1667
tissue
525
primary cell
463
cell line
227
in vitro differentiated cells
Organ
54
connective tissue
12
embryo
4
epithelium
2
pancreas
1
heart
Project
227
AMP
Genome assembly (visualization)
227
GRCh38
226
hg19
Lab
227
AMP-T2D consortium
Audit category:
97
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
8
inconsistent control read length
month_released!
December, 2017
BIOSAMPLE
ASSAY
227 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
48
1
neural progenitor cell
7
13
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
6
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