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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
2
Hi-C
1
total RNA-seq
Assay category
DNA accessibility
42
DNA binding
2
3D chromatin structure
1
Transcription
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
40
May, 2024
3
October, 2019
1
March, 2023
1
May, 2023
Available data
2667
bigWig
bam
1395
tsv
1217
bed narrowPeak
898
fastq
767
bigBed narrowPeak
246
tagAlign
76
bed broadPeak
62
bigBed broadPeak
54
bed bed3+
17
bed bedMethyl
17
bigBed bedMethyl
1
hdf5
1
hic
1
tagAlign bed3+
Organism
45
Homo sapiens
Biosample type
43
tissue
1
cell line
1
primary cell
Organ
40
heart
2
brain
1
adipose tissue
1
connective tissue
1
pancreas
Project
44
AMP
1
ITG
Genome assembly (visualization)
125
hg19
45
GRCh38
5
hg18
Lab
40
Patrick T. Ellinor, Broad
4
AMP-T2D consortium
1
ITG
Audit category:
1
inconsistent assembly
month_released!
December, 2019
files.file_type!
bam
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
Hi-C
total RNA-seq
tissue
left cardiac atrium
40
adipose tissue
1
dorsal plus ventral thalamus
1
planum polare
1
cell line
Panc1
1
primary cell
chondrocytes
1
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