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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
139
total RNA-seq
100
single cell RNA-seq
49
ATAC-seq
17
DNase-seq
2
small RNA-seq
1
Hi-C
Assay category
241
Transcription
195
DNA binding
66
DNA accessibility
1
3D chromatin structure
Target of assay
188
histone
188
histone modification
97
narrow histone mark
91
broad histone mark
7
RNA binding protein
7
transcription factor
3
control
1
chromatin remodeller
Date released
149
May, 2021
72
September, 2018
48
July, 2018
45
May, 2020
43
April, 2018
42
August, 2017
35
June, 2019
14
July, 2019
14
October, 2019
7
August, 2020
6
November, 2017
6
November, 2020
December, 2019
5
September, 2017
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
1
March, 2023
Available data
492
bam
486
bigWig
241
tsv
239
bed narrowPeak
229
fastq
98
tagAlign
89
bigBed narrowPeak
35
bed broadPeak
35
bigBed broadPeak
20
bed bed3+
1
bed bed3
1
hic
Organism
503
Homo sapiens
Biosample type
1694
tissue
503
primary cell
452
cell line
265
in vitro differentiated cells
3
stem cell
Organ
220
epithelium
192
pancreas
32
connective tissue
kidney
22
vasculature
18
blood vessel
14
brain
12
vein
11
musculature of body
10
heart
6
liver
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
312
AMP
180
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
598
hg19
503
GRCh38
Lab
312
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
31
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
December, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
503 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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