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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
570
ChIP-seq
109
DNase-seq
83
ATAC-seq
16
WGBS
15
small RNA-seq
Assay category
916
Transcription
570
DNA binding
192
DNA accessibility
16
DNA methylation
Target of assay
474
histone modification
473
histone
241
narrow histone mark
232
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
162
May, 2020
159
October, 2019
158
August, 2017
116
July, 2018
95
June, 2019
92
May, 2019
59
July, 2019
57
November, 2017
46
April, 2019
45
October, 2018
40
May, 2024
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
22
November, 2018
14
October, 2017
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
1
May, 2023
Available data
1622
bigWig
1613
bam
915
tsv
731
bed narrowPeak
469
bigBed narrowPeak
280
fastq
136
bed bed3+
123
bed broadPeak
116
tagAlign
108
bigBed broadPeak
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1688
Homo sapiens
Biosample type
1694
tissue
503
primary cell
452
cell line
265
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
386
pancreas
238
liver
203
brain
191
heart
kidney
105
blood vessel
105
vasculature
96
limb
66
bone element
62
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1692
AMP
2
T1D
Genome assembly (visualization)
1694
GRCh38
1663
hg19
Lab
1651
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
December, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
1694 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
266
25
1
22
liver
147
75
2
1
bone tissue
58
coronary artery
3
2
36
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