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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
550
ChIP-seq
458
total RNA-seq
177
DNase-seq
150
ATAC-seq
16
WGBS
16
small RNA-seq
Assay category
550
DNA binding
474
Transcription
327
DNA accessibility
16
DNA methylation
Target of assay
459
histone modification
458
histone
236
narrow histone mark
222
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
February, 2021
163
June, 2019
162
May, 2020
161
October, 2019
158
August, 2017
116
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
61
July, 2019
57
November, 2017
45
October, 2018
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
22
November, 2018
14
October, 2017
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1251
bam
1228
bigWig
835
bed narrowPeak
555
bigBed narrowPeak
473
tsv
280
fastq
204
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1361
Homo sapiens
Biosample type
1367
tissue
534
primary cell
372
cell line
243
in vitro differentiated cells
3
stem cell
Organ
386
pancreas
238
liver
203
brain
165
kidney
151
heart
105
blood vessel
105
vasculature
90
limb
62
artery
42
musculature of body
36
adipose tissue
36
connective tissue
31
nerve
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1365
AMP
2
T1D
Genome assembly (visualization)
1367
GRCh38
1303
hg19
Lab
1289
AMP-T2D consortium
75
Katalin Susztak, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2021
BIOSAMPLE
ASSAY
1367 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
tissue
islet of Langerhans
25
266
1
22
liver
75
147
2
1
kidney
20
13
75
coronary artery
3
2
36
body of pancreas
26
2
4
4
2
2
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