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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
512
ChIP-seq
189
total RNA-seq
170
DNase-seq
124
ATAC-seq
14
small RNA-seq
12
WGBS
Assay category
512
DNA binding
294
DNA accessibility
203
Transcription
12
DNA methylation
Target of assay
435
histone modification
434
histone
225
narrow histone mark
209
broad histone mark
76
transcription factor
19
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
1
control
Date released
February, 2021
162
May, 2020
161
October, 2019
159
June, 2019
91
May, 2019
64
April, 2019
64
August, 2021
57
July, 2019
57
November, 2017
40
May, 2024
36
December, 2017
35
August, 2017
35
February, 2023
16
November, 2018
12
May, 2023
9
October, 2017
6
January, 2019
6
March, 2020
5
October, 2018
3
December, 2018
2
May, 2021
1
November, 2019
Available data
905
bigWig
868
bam
778
bed narrowPeak
495
bigBed narrowPeak
202
tsv
178
bed broadPeak
177
bed bed3+
170
bigBed broadPeak
110
fastq
110
tagAlign
64
xls
12
bed bedMethyl
12
bigBed bedMethyl
1
tagAlign bed3+
Organism
1021
Homo sapiens
Biosample type
1021
tissue
343
cell line
342
primary cell
241
in vitro differentiated cells
3
stem cell
Organ
pancreas
238
liver
203
brain
191
heart
165
kidney
105
blood vessel
105
vasculature
90
limb
62
artery
42
musculature of body
36
adipose tissue
36
connective tissue
31
nerve
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1021
AMP
Genome assembly (visualization)
1021
GRCh38
890
hg19
Lab
906
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
February, 2021
organ_slims!
pancreas
BIOSAMPLE
ASSAY
1021 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
liver
75
147
2
1
kidney
20
13
75
coronary artery
3
2
36
left cardiac atrium
40
1
heart left ventricle
28
3
3
2
2
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