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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
total RNA-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
18
DNA binding
13
Transcription
5
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
February, 2021
16
August, 2017
12
July, 2019
5
October, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
37
bam
36
bigWig
23
fastq
12
tsv
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
38
Homo sapiens
Biosample type
36
tissue
2
primary cell
Organ
609
pancreas
530
liver
268
epithelium
217
brain
205
kidney
202
heart
127
vasculature
123
blood vessel
116
connective tissue
90
limb
64
artery
54
blood
54
bodily fluid
53
musculature of body
38
adipose tissue
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
6
eye
1
pericardium
1
pituitary gland
Project
38
AMP
Genome assembly (visualization)
40
hg19
38
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2021
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
white adipose tissue
12
omental fat pad
3
4
1
1
2
subcutaneous adipose tissue
2
4
1
1
adipose tissue
1
1
2
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
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