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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
57
ChIP-seq
17
WGBS
1
Hi-C
Assay category
122
DNA accessibility
57
DNA binding
17
DNA methylation
1
3D chromatin structure
Target of assay
53
histone
53
histone modification
37
broad histone mark
16
narrow histone mark
4
transcription factor
3
recombinant protein
1
RNA binding protein
Date released
65
August, 2021
54
November, 2017
35
February, 2023
June, 2019
11
May, 2023
9
July, 2019
9
November, 2018
7
August, 2020
3
September, 2020
2
August, 2017
1
March, 2023
1
October, 2017
Available data
156
bed narrowPeak
85
bigWig
76
bam
64
xls
56
bigBed narrowPeak
41
tagAlign
24
fastq
17
bed bedMethyl
17
bigBed bedMethyl
1
hic
Organism
197
Homo sapiens
Biosample type
180
tissue
11
primary cell
5
cell line
1
in vitro differentiated cells
Organ
75
kidney
54
brain
41
heart
36
blood vessel
36
vasculature
35
artery
14
pancreas
10
epithelium
5
liver
2
adipose tissue
2
connective tissue
2
spleen
1
limb
1
musculature of body
Project
186
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
hg19
2877
GRCh38
5
hg18
Lab
111
AMP-T2D consortium
75
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
1
ITG
month_released!
June, 2019
assembly!
hg19
BIOSAMPLE
ASSAY
197 results
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ATAC-seq
ChIP-seq
WGBS
Hi-C
tissue
kidney
75
coronary artery
35
layer of hippocampus
16
caudate nucleus
11
substantia nigra
10
+ See 14 more…
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
chondrocytes
1
cell line
HepG2
4
1
in vitro differentiated cells
neural progenitor cell
1
See all biosamples
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