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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
2
DNase-seq
Assay category
171
DNA binding
12
Transcription
4
DNA accessibility
Target of assay
168
histone
168
histone modification
107
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
78
October, 2019
63
November, 2017
June, 2019
25
May, 2019
12
July, 2019
7
October, 2017
2
November, 2018
Available data
185
bam
184
bigWig
171
bed narrowPeak
96
bigBed narrowPeak
82
tagAlign
16
bed broadPeak
15
fastq
12
tsv
8
bigBed broadPeak
2
bed bed3+
1
tagAlign bed3+
Organism
187
Homo sapiens
Biosample type
178
tissue
9
primary cell
Organ
631
pancreas
551
connective tissue
529
liver
423
adipose tissue
276
epithelium
193
heart
187
brain
184
vasculature
182
blood vessel
126
artery
125
kidney
66
bone element
64
limb
54
blood
54
bodily fluid
31
nerve
29
embryo
16
spleen
12
musculature of body
12
vein
8
skeleton
1
pericardium
1
pituitary gland
Project
187
AMP
Genome assembly (visualization)
187
GRCh38
144
hg19
Lab
187
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
June, 2019
BIOSAMPLE
ASSAY
187 results
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ChIP-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
tissue
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
brain
11
1
2
caudate nucleus
12
+ See 67 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
cerebellar granule cell
2
choroid plexus epithelial cell
2
Purkinje cell
1
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