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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ChIP-seq
5
ATAC-seq
2
DNase-seq
Assay category
111
DNA binding
7
DNA accessibility
Target of assay
88
histone modification
87
histone
44
broad histone mark
42
narrow histone mark
23
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
280
November, 2017
210
June, 2019
188
October, 2019
118
August, 2017
103
May, 2021
96
May, 2019
90
August, 2021
72
December, 2017
72
November, 2018
64
April, 2019
46
September, 2018
45
October, 2018
37
November, 2019
35
February, 2023
30
December, 2018
23
February, 2021
21
January, 2019
19
May, 2020
16
February, 2018
12
October, 2017
5
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
249
bam
249
fastq
247
bigWig
118
bed narrowPeak
89
tsv
38
bigBed narrowPeak
33
bed bed3+
19
bed broadPeak
17
tagAlign
13
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
112
Homo sapiens
Biosample type
45
tissue
43
in vitro differentiated cells
30
primary cell
Organ
45
connective tissue
42
pancreas
18
liver
17
epithelium
2
adipose tissue
Project
118
AMP
Genome assembly (visualization)
142
hg19
118
GRCh38
Lab
118
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
tissue
liver
17
islet of Langerhans
12
1
pancreas
12
adipose tissue
1
right lobe of liver
1
+ See 1 more…
in vitro differentiated cells
adipocyte
42
1
primary cell
skeletal muscle myoblast
13
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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