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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ChIP-seq
133
total RNA-seq
18
small RNA-seq
11
ATAC-seq
10
WGBS
3
single cell RNA-seq
2
DNase-seq
Assay category
154
Transcription
151
DNA binding
13
DNA accessibility
10
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
46
transcription factor
7
RNA binding protein
5
control
3
chromatin remodeller
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
328
bam
326
bigWig
249
fastq
154
tsv
123
bed narrowPeak
38
bigBed narrowPeak
33
bed bed3+
19
bed broadPeak
17
tagAlign
13
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
Organism
322
Homo sapiens
Biosample type
219
tissue
60
primary cell
49
in vitro differentiated cells
Organ
156
pancreas
81
connective tissue
28
adipose tissue
26
liver
22
epithelium
21
heart
12
brain
8
blood vessel
8
vasculature
6
kidney
5
musculature of body
3
artery
1
limb
1
pericardium
Project
328
AMP
Genome assembly (visualization)
367
hg19
328
GRCh38
Lab
328
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
328 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
DNase-seq
tissue
islet of Langerhans
21
89
1
liver
18
2
1
pancreas
12
white adipose tissue
12
heart left ventricle
2
2
2
+ See 24 more…
primary cell
skeletal muscle myoblast
13
1
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
cerebellar granule cell
2
+ See 14 more…
in vitro differentiated cells
adipocyte
48
1
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