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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
74
ATAC-seq
48
single cell RNA-seq
16
ChIP-seq
Assay category
184
Transcription
74
DNA accessibility
16
DNA binding
Target of assay
16
histone
16
histone modification
9
narrow histone mark
7
broad histone mark
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
210
bam
200
bigWig
184
tsv
90
bed narrowPeak
64
xls
50
fastq
16
tagAlign
3
bed bed3+
Organism
274
Homo sapiens
Biosample type
180
tissue
56
primary cell
30
in vitro differentiated cells
8
cell line
Organ
153
pancreas
64
kidney
41
epithelium
8
embryo
8
liver
2
connective tissue
Project
274
AMP
Genome assembly (visualization)
274
GRCh38
229
hg19
Lab
210
AMP-T2D consortium
64
Katalin Susztak, Upenn
Audit category:
6
inconsistent ontology term
BIOSAMPLE
ASSAY
274 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
tissue
islet of Langerhans
116
kidney
64
primary cell
pancreatic beta cell
9
hepatocyte
5
3
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
7
10
13
cell line
H1-hESC
8
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