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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
277
total RNA-seq
170
ChIP-seq
5
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
277
Transcription
170
DNA binding
7
DNA accessibility
2
DNA methylation
Target of assay
122
histone modification
121
histone
71
narrow histone mark
49
broad histone mark
46
transcription factor
7
RNA binding protein
3
chromatin remodeller
2
control
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
456
bam
454
bigWig
277
tsv
249
fastq
137
bed narrowPeak
38
bigBed narrowPeak
36
tagAlign
33
bed bed3+
19
bed broadPeak
13
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
450
Homo sapiens
Biosample type
320
tissue
87
primary cell
49
in vitro differentiated cells
Organ
181
liver
152
pancreas
65
connective tissue
17
epithelium
16
adipose tissue
Project
411
AMP
45
T1D
Genome assembly (visualization)
536
hg19
456
GRCh38
Lab
411
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
456 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
tissue
liver
143
37
islet of Langerhans
89
21
1
pancreas
12
white adipose tissue
12
adipose tissue
1
2
+ See 2 more…
primary cell
skeletal muscle myoblast
13
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
B cell
2
+ See 25 more…
in vitro differentiated cells
adipocyte
48
1
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