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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
312
ChIP-seq
26
total RNA-seq
14
ATAC-seq
Assay category
312
DNA binding
26
Transcription
14
DNA accessibility
Target of assay
204
transcription factor
105
histone
105
histone modification
66
recombinant protein
62
broad histone mark
43
narrow histone mark
31
RNA binding protein
13
chromatin remodeller
2
other context
2
other post-translational modification
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
352
bam
351
bigWig
326
bed narrowPeak
295
fastq
294
bigBed narrowPeak
55
bed broadPeak
54
tagAlign
50
bigBed broadPeak
26
tsv
Organism
352
Homo sapiens
Biosample type
217
cell line
78
primary cell
57
tissue
Organ
217
liver
72
pancreas
65
epithelium
63
brain
4
vasculature
2
blood vessel
Project
352
AMP
Genome assembly (visualization)
353
hg19
352
GRCh38
Lab
352
AMP-T2D consortium
Audit category:
35
missing controlled_by
Audit category:
17
inconsistent control read length
2
inconsistent control run_type
BIOSAMPLE
ASSAY
352 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
cell line
HepG2
217
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 3 more…
tissue
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
substantia nigra
11
cingulate gyrus
6
+ See 1 more…
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