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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
9
DNase-seq
7
WGBS
Assay category
140
DNA binding
9
DNA accessibility
7
DNA methylation
Target of assay
105
transcription factor
30
histone
30
histone modification
25
RNA binding protein
15
broad histone mark
15
narrow histone mark
15
recombinant protein
10
chromatin remodeller
5
control
3
other context
3
other post-translational modification
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
156
bam
156
fastq
151
bigWig
144
bed narrowPeak
122
bigBed narrowPeak
24
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
156
Homo sapiens
Biosample type
58
tissue
57
cell line
38
in vitro differentiated cells
3
stem cell
Organ
102
liver
16
epithelium
12
blood
12
bodily fluid
9
embryo
6
pancreas
6
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
156
AMP
Genome assembly (visualization)
156
GRCh38
148
hg19
Lab
156
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
16
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
156 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
tissue
liver
33
2
right lobe of liver
7
1
spleen
3
1
2
body of pancreas
2
2
brain
2
+ See 2 more…
cell line
HepG2
44
1
GM12878
12
in vitro differentiated cells
hepatocyte
14
pancreatic endoderm
7
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
stem cell
hESC
3
See all biosamples
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