Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
total RNA-seq
63
ChIP-seq
48
single cell RNA-seq
9
DNase-seq
7
WGBS
Assay category
164
Transcription
63
DNA binding
9
DNA accessibility
7
DNA methylation
Target of assay
63
transcription factor
21
RNA binding protein
15
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
243
bam
243
bigWig
164
tsv
129
fastq
72
bed narrowPeak
72
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
243
Homo sapiens
Biosample type
138
tissue
57
cell line
48
primary cell
Organ
159
pancreas
52
liver
33
epithelium
12
blood
12
bodily fluid
6
spleen
3
connective tissue
2
brain
1
adipose tissue
Project
243
AMP
Genome assembly (visualization)
243
GRCh38
235
hg19
Lab
243
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
243 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
tissue
islet of Langerhans
116
liver
4
2
spleen
3
1
2
body of pancreas
2
2
brain
2
+ See 3 more…
cell line
HepG2
44
1
GM12878
12
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 10 more…
See all biosamples
Download