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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
44
total RNA-seq
18
small RNA-seq
15
WGBS
9
DNase-seq
6
ATAC-seq
3
single cell RNA-seq
Assay category
65
Transcription
63
DNA binding
15
DNA accessibility
15
DNA methylation
Target of assay
63
transcription factor
21
RNA binding protein
15
recombinant protein
7
chromatin remodeller
3
control
3
other context
3
other post-translational modification
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
158
bam
158
bigWig
79
fastq
77
bed narrowPeak
72
bigBed narrowPeak
65
tsv
15
bed bedMethyl
15
bigBed bedMethyl
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
Organism
158
Homo sapiens
Biosample type
83
tissue
57
cell line
18
primary cell
Organ
59
liver
21
heart
17
connective tissue
14
brain
13
adipose tissue
12
blood
12
bodily fluid
10
pancreas
8
blood vessel
8
vasculature
6
kidney
6
spleen
5
epithelium
5
musculature of body
3
artery
1
limb
1
pericardium
Project
158
AMP
Genome assembly (visualization)
162
hg19
158
GRCh38
Lab
158
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
158 results
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ChIP-seq
total RNA-seq
small RNA-seq
WGBS
DNase-seq
ATAC-seq
single cell RNA-seq
tissue
liver
4
2
1
2
body of pancreas
2
2
2
2
heart left ventricle
2
2
2
omental fat pad
4
1
1
spleen
3
2
1
+ See 23 more…
cell line
HepG2
44
1
GM12878
12
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
cardiac atrium fibroblast
1
+ See 10 more…
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