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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
9
DNase-seq
7
WGBS
2
total RNA-seq
Assay category
108
DNA binding
9
DNA accessibility
7
DNA methylation
2
Transcription
Target of assay
78
transcription factor
32
RNA binding protein
30
histone
30
histone modification
19
broad histone mark
15
recombinant protein
11
narrow histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
126
bam
126
bigWig
117
bed narrowPeak
117
bigBed narrowPeak
112
fastq
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
tsv
Organism
126
Homo sapiens
Biosample type
67
tissue
57
cell line
2
primary cell
Organ
52
liver
48
pancreas
12
blood
12
bodily fluid
6
adipose tissue
6
connective tissue
6
spleen
2
brain
2
epithelium
Project
126
AMP
Genome assembly (visualization)
126
GRCh38
118
hg19
Lab
126
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
126 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
total RNA-seq
tissue
body of pancreas
25
2
2
endocrine pancreas
14
liver
4
2
spleen
3
1
2
omental fat pad
3
1
+ See 4 more…
cell line
HepG2
44
1
GM12878
12
primary cell
pancreatic acinar cell
2
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