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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
ChIP-seq
31
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
169
DNA binding
33
DNA accessibility
12
Transcription
Target of assay
167
histone
167
histone modification
106
narrow histone mark
61
broad histone mark
3
control
2
RNA binding protein
2
transcription factor
Date released
78
October, 2019
61
November, 2017
29
June, 2019
25
May, 2019
12
July, 2019
7
October, 2017
2
November, 2018
Available data
212
bam
211
bigWig
198
bed narrowPeak
123
bigBed narrowPeak
82
tagAlign
43
bed broadPeak
35
bigBed broadPeak
31
bed bed3+
13
fastq
12
tsv
1
tagAlign bed3+
Organism
214
Homo sapiens
Biosample type
203
tissue
11
primary cell
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
226
heart
217
brain
205
kidney
191
vasculature
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
214
AMP
Genome assembly (visualization)
214
GRCh38
159
hg19
Lab
214
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
214 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 73 more…
primary cell
astrocyte of the cerebellum
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
+ See 1 more…
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