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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
49
ATAC-seq
26
DNase-seq
2
small RNA-seq
1
Hi-C
Assay category
252
Transcription
205
DNA binding
75
DNA accessibility
1
3D chromatin structure
Target of assay
197
histone
197
histone modification
101
narrow histone mark
96
broad histone mark
8
RNA binding protein
8
transcription factor
3
control
1
chromatin remodeller
Date released
149
May, 2021
72
September, 2018
48
July, 2018
45
May, 2020
44
June, 2019
43
April, 2018
42
August, 2017
22
October, 2019
18
July, 2019
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
1
March, 2023
Available data
522
bam
516
bigWig
258
bed narrowPeak
252
tsv
229
fastq
102
bigBed narrowPeak
98
tagAlign
44
bed broadPeak
44
bigBed broadPeak
29
bed bed3+
1
bed bed3
1
hic
Organism
533
Homo sapiens
Biosample type
1816
tissue
533
primary cell
464
cell line
265
in vitro differentiated cells
3
stem cell
Organ
225
epithelium
192
pancreas
32
connective tissue
28
kidney
22
vasculature
18
blood vessel
14
brain
12
vein
11
liver
11
musculature of body
10
heart
eye
2
adipose tissue
2
artery
1
pericardium
Project
342
AMP
180
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
624
hg19
533
GRCh38
Lab
342
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
36
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
eye
BIOSAMPLE
ASSAY
533 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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