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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
DNase-seq
70
ChIP-seq
Assay category
198
DNA accessibility
70
DNA binding
Target of assay
36
transcription factor
34
histone
34
histone modification
17
broad histone mark
17
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
183
June, 2019
55
November, 2017
13
August, 2017
7
November, 2018
6
October, 2019
3
October, 2017
1
November, 2020
Available data
2338
bam
2319
bigWig
1444
bed narrowPeak
994
tsv
909
bigBed narrowPeak
594
fastq
268
bed broadPeak
260
bigBed broadPeak
238
tagAlign
229
bed bed3+
64
xls
13
bed bedMethyl
13
bigBed bedMethyl
2
bed bed3
1
hic
1
tagAlign bed3+
Organism
268
Homo sapiens
Biosample type
178
tissue
45
primary cell
44
cell line
1
in vitro differentiated cells
Organ
78
kidney
49
liver
46
brain
36
limb
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
pancreas
11
blood vessel
9
connective tissue
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
268
AMP
Genome assembly (visualization)
280
hg19
268
GRCh38
Lab
268
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
organ_slims!
pancreas
BIOSAMPLE
ASSAY
268 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
skeletal muscle myoblast
12
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 18 more…
cell line
HepG2
44
in vitro differentiated cells
adipocyte
1
See all biosamples
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