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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
DNase-seq
62
ChIP-seq
Assay category
198
DNA accessibility
62
DNA binding
Target of assay
36
transcription factor
26
histone
26
histone modification
13
broad histone mark
13
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
183
June, 2019
50
November, 2017
13
August, 2017
7
November, 2018
6
October, 2019
1
November, 2020
Available data
2338
bam
2279
bigWig
1404
bed narrowPeak
994
tsv
909
bigBed narrowPeak
594
fastq
268
bed broadPeak
260
bigBed broadPeak
238
tagAlign
229
bed bed3+
64
xls
13
bed bedMethyl
13
bigBed bedMethyl
2
bed bed3
1
hic
1
tagAlign bed3+
Organism
260
Homo sapiens
Biosample type
170
tissue
45
primary cell
44
cell line
1
in vitro differentiated cells
Organ
78
kidney
49
liver
38
brain
36
limb
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
11
blood vessel
9
connective tissue
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
260
AMP
Genome assembly (visualization)
260
GRCh38
257
hg19
Lab
260
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
11
inconsistent control read length
1
inconsistent assembly
organ_slims!
pancreas
BIOSAMPLE
ASSAY
260 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
skeletal muscle myoblast
12
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 18 more…
cell line
HepG2
44
in vitro differentiated cells
adipocyte
1
See all biosamples
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