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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
327
ChIP-seq
69
total RNA-seq
9
ATAC-seq
1
DNase-seq
1
WGBS
Assay category
327
DNA binding
69
Transcription
10
DNA accessibility
1
DNA methylation
Target of assay
308
transcription factor
88
recombinant protein
57
RNA binding protein
28
chromatin remodeller
14
histone
14
histone modification
7
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
66
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
12
October, 2019
8
August, 2021
March, 2020
Available data
407
bam
398
bigWig
337
bed narrowPeak
321
fastq
316
bigBed narrowPeak
69
tsv
44
bed broadPeak
44
bigBed broadPeak
14
tagAlign
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
407
Homo sapiens
Biosample type
1467
tissue
407
cell line
344
primary cell
261
in vitro differentiated cells
3
stem cell
Organ
268
liver
64
artery
64
blood vessel
64
heart
64
vasculature
54
blood
54
bodily fluid
pancreas
46
epithelium
12
kidney
8
embryo
Project
407
AMP
Genome assembly (visualization)
470
hg19
407
GRCh38
Lab
407
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
organ_slims!
pancreas
month_released!
March, 2020
BIOSAMPLE
ASSAY
407 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
261
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
H1-hESC
8
RCC 7860 HIF1a re-expression
3
1
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