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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
112
ChIP-seq
17
ATAC-seq
1
DNase-seq
Assay category
127
Transcription
112
DNA binding
18
DNA accessibility
Target of assay
77
histone
77
histone modification
39
narrow histone mark
37
broad histone mark
36
transcription factor
RNA binding protein
5
control
3
chromatin remodeller
Date released
82
May, 2021
45
August, 2017
36
December, 2017
31
February, 2018
30
August, 2021
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
257
bam
235
bigWig
127
tsv
120
bed narrowPeak
112
fastq
19
bed bed3+
16
tagAlign
13
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
257
Homo sapiens
Biosample type
1454
tissue
352
cell line
335
primary cell
257
in vitro differentiated cells
3
stem cell
Organ
50
connective tissue
21
embryo
18
epithelium
12
liver
pancreas
1
heart
Project
257
AMP
Genome assembly (visualization)
289
hg19
257
GRCh38
4
hg18
Lab
257
AMP-T2D consortium
Audit category:
99
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
pancreas
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
257 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
44
1
neural progenitor cell
7
13
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
13
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