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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
342
ChIP-seq
52
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
342
DNA binding
52
Transcription
4
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
305
transcription factor
88
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
28
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
57
November, 2018
28
February, 2021
27
December, 2018
20
January, 2019
20
October, 2019
13
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
399
bam
398
bigWig
346
bed narrowPeak
323
bigBed narrowPeak
321
fastq
52
tsv
45
bed broadPeak
45
bigBed broadPeak
10
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
400
Homo sapiens
Biosample type
1754
tissue
514
primary cell
400
cell line
265
in vitro differentiated cells
3
stem cell
Organ
268
liver
64
artery
64
blood vessel
64
heart
vasculature
55
pancreas
54
blood
54
bodily fluid
49
epithelium
12
kidney
8
embryo
Project
396
AMP
4
T1D
Genome assembly (visualization)
466
hg19
400
GRCh38
Lab
400
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
organ_slims!
vein
vasculature
BIOSAMPLE
ASSAY
400 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
261
5
1
1
GM12878
54
EndoC_BH1
13
33
1
H1-hESC
8
Panc1
6
1
1
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