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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ATAC-seq
42
ChIP-seq
2
Hi-C
1
total RNA-seq
Assay category
123
DNA accessibility
42
DNA binding
2
3D chromatin structure
1
Transcription
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
64
August, 2021
40
May, 2024
35
February, 2023
12
May, 2023
7
August, 2020
3
October, 2019
3
September, 2020
2
March, 2019
1
March, 2023
1
October, 2017
Available data
bam
2918
bigWig
1620
bed narrowPeak
1400
tsv
986
bigBed narrowPeak
951
fastq
280
bed broadPeak
265
bigBed broadPeak
256
bed bed3+
tagAlign
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
168
Homo sapiens
Biosample type
156
tissue
11
primary cell
1
cell line
Organ
75
heart
75
kidney
35
artery
35
blood vessel
35
vasculature
14
pancreas
10
epithelium
2
brain
1
adipose tissue
1
connective tissue
Project
157
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
192
hg19
168
GRCh38
5
hg18
Lab
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
39
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
organ_slims!
vein
files.file_type!
bam
tagAlign
BIOSAMPLE
ASSAY
168 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
tissue
kidney
75
left cardiac atrium
40
coronary artery
35
islet of Langerhans
3
adipose tissue
1
+ See 2 more…
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
chondrocytes
1
cell line
Panc1
1
See all biosamples
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