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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
453
total RNA-seq
18
ChIP-seq
3
ATAC-seq
2
DNase-seq
2
WGBS
2
small RNA-seq
Assay category
455
Transcription
18
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
444
February, 2021
16
August, 2017
10
July, 2019
5
October, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
479
bam
478
bigWig
454
tsv
23
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
480
Homo sapiens
Biosample type
480
tissue
54
in vitro differentiated cells
32
primary cell
Organ
480
connective tissue
422
adipose tissue
386
pancreas
238
liver
203
brain
165
kidney
151
heart
105
blood vessel
105
vasculature
96
limb
66
bone element
62
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
480
AMP
Genome assembly (visualization)
482
hg19
480
GRCh38
Lab
480
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
480 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
tissue
adipose tissue
382
1
2
bone tissue
58
white adipose tissue
12
omental fat pad
4
3
1
2
1
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
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