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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
DNase-seq
15
ChIP-seq
4
total RNA-seq
2
small RNA-seq
1
WGBS
Assay category
37
DNA accessibility
15
DNA binding
6
Transcription
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
47
June, 2019
5
July, 2019
5
May, 2019
2
March, 2020
Available data
59
bam
59
bigWig
52
bed narrowPeak
52
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
59
Homo sapiens
Biosample type
45
tissue
14
primary cell
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
226
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
59
AMP
Genome assembly (visualization)
107
hg19
59
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
BIOSAMPLE
ASSAY
59 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
WGBS
tissue
muscle of leg
13
5
1
muscle of arm
17
retina
3
psoas muscle
2
skeletal muscle tissue
1
1
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primary cell
skeletal muscle satellite cell
7
1
1
retinal pigment epithelial cell
1
2
skeletal muscle cell
1
1
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