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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
total RNA-seq
47
ATAC-seq
9
ChIP-seq
6
WGBS
1
small RNA-seq
Assay category
70
Transcription
47
DNA accessibility
9
DNA binding
6
DNA methylation
Target of assay
5
histone
5
histone modification
4
transcription factor
3
broad histone mark
2
narrow histone mark
Date released
64
February, 2021
35
February, 2023
21
July, 2019
7
October, 2019
3
May, 2021
2
March, 2020
Available data
191
bam
183
bigWig
150
bed narrowPeak
bigBed narrowPeak
70
tsv
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
tagAlign
Organism
132
Homo sapiens
Biosample type
64
cell line
63
tissue
4
primary cell
1
in vitro differentiated cells
Organ
546
pancreas
541
connective tissue
415
adipose tissue
219
epithelium
205
liver
132
heart
109
blood vessel
109
vasculature
103
artery
102
kidney
91
brain
66
bone element
29
embryo
13
limb
8
skeleton
7
musculature of body
5
nerve
3
spleen
1
pericardium
1
pituitary gland
Project
132
AMP
Genome assembly (visualization)
132
GRCh38
97
hg19
Lab
132
AMP-T2D consortium
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
132 results
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total RNA-seq
ATAC-seq
ChIP-seq
WGBS
small RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
4
tissue
coronary artery
36
heart
4
5
1
1
heart left ventricle
3
2
2
heart right ventricle
1
2
right atrium auricular region
2
1
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primary cell
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
in vitro differentiated cells
cardiac fibroblast
1
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