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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
36
DNase-seq
18
total RNA-seq
8
ATAC-seq
1
WGBS
Assay category
62
DNA binding
44
DNA accessibility
18
Transcription
1
DNA methylation
Target of assay
58
histone
58
histone modification
38
broad histone mark
20
narrow histone mark
3
transcription factor
1
control
Date released
52
October, 2019
32
June, 2019
10
February, 2018
9
December, 2017
8
August, 2021
6
February, 2021
5
May, 2019
2
May, 2021
1
July, 2019
Available data
125
bam
118
bigWig
105
bed narrowPeak
83
bigBed narrowPeak
39
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
19
fastq
18
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
125
Homo sapiens
Biosample type
96
tissue
21
in vitro differentiated cells
8
cell line
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
226
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
125
AMP
Genome assembly (visualization)
125
GRCh38
125
hg19
1
hg18
Lab
125
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
tissue
tibial nerve
24
2
4
1
tibial artery
18
2
1
muscle of leg
5
13
1
muscle of arm
17
distal epiphysis of femur
1
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in vitro differentiated cells
pancreatic endoderm
13
4
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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