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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
30
ChIP-seq
4
ATAC-seq
4
WGBS
3
DNase-seq
3
small RNA-seq
Assay category
399
Transcription
30
DNA binding
7
DNA accessibility
4
DNA methylation
Target of assay
23
transcription factor
7
histone
7
histone modification
5
RNA binding protein
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
386
February, 2021
16
August, 2017
12
July, 2019
7
November, 2018
6
January, 2019
5
October, 2018
3
December, 2018
2
October, 2017
1
June, 2019
1
May, 2023
1
November, 2019
Available data
439
bam
438
bigWig
398
tsv
39
fastq
25
bed narrowPeak
22
bigBed narrowPeak
7
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
3
bigBed broadPeak
Organism
440
Homo sapiens
Biosample type
438
tissue
2
primary cell
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
226
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
440
AMP
Genome assembly (visualization)
440
GRCh38
440
hg19
Lab
440
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
440 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
tissue
adipose tissue
382
1
2
spleen
12
1
2
1
white adipose tissue
12
omental fat pad
4
3
1
2
1
subcutaneous adipose tissue
6
2
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
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