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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
18
ChIP-seq
8
ATAC-seq
6
DNase-seq
Assay category
54
Transcription
18
DNA binding
14
DNA accessibility
Target of assay
12
histone
12
histone modification
7
narrow histone mark
6
transcription factor
5
broad histone mark
2
RNA binding protein
Date released
64
February, 2021
12
October, 2019
4
June, 2019
4
November, 2017
2
July, 2019
Available data
86
bam
78
bigWig
54
tsv
32
bed narrowPeak
20
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
6
bed bed3+
4
fastq
4
tagAlign
Organism
86
Homo sapiens
Biosample type
tissue
64
cell line
22
primary cell
Organ
294
epithelium
293
liver
249
pancreas
86
connective tissue
86
vasculature
82
blood vessel
75
heart
66
artery
54
blood
54
bodily fluid
40
kidney
29
embryo
14
brain
12
vein
11
musculature of body
3
eye
2
adipose tissue
1
pericardium
Project
86
AMP
Genome assembly (visualization)
95
hg19
86
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
86 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
4
8
primary cell
endothelial cell of umbilical vein
10
2
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
endothelial cell of coronary artery
1
kidney capillary endothelial cell
1
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