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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
Assay category
86
DNA binding
Target of assay
571
histone modification
570
histone
434
transcription factor
293
narrow histone mark
276
broad histone mark
88
recombinant protein
86
RNA binding protein
33
chromatin remodeller
9
control
5
other context
5
other post-translational modification
Date released
28
November, 2017
21
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
4
December, 2017
4
May, 2019
3
April, 2019
2
December, 2018
1
November, 2019
Available data
86
bam
86
bigWig
85
bed narrowPeak
79
bigBed narrowPeak
78
fastq
3
bed broadPeak
3
bigBed broadPeak
2
bed bed3+
Organism
86
Homo sapiens
Biosample type
58
cell line
22
tissue
primary cell
6
in vitro differentiated cells
Organ
51
liver
10
blood
10
bodily fluid
9
connective tissue
9
pancreas
5
adipose tissue
5
heart
3
blood vessel
3
epithelium
3
vasculature
1
artery
Project
86
AMP
Genome assembly (visualization)
90
hg19
86
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent control run_type
biosample_type!
primary cell
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
cell line
HepG2
47
GM12878
10
EndoC_BH1
1
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
islet of Langerhans
2
subcutaneous adipose tissue
2
+ See 7 more…
in vitro differentiated cells
adipocyte
4
hepatocyte
2
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