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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
Assay category
39
DNA binding
Target of assay
769
histone modification
768
histone
443
transcription factor
395
narrow histone mark
372
broad histone mark
95
RNA binding protein
88
recombinant protein
34
chromatin remodeller
12
control
5
other context
5
other post-translational modification
Date released
15
November, 2017
10
November, 2018
6
January, 2019
3
August, 2017
3
December, 2017
2
December, 2018
Available data
39
bam
39
bed narrowPeak
39
bigWig
39
fastq
37
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
Organism
39
Homo sapiens
Biosample type
30
cell line
5
tissue
3
in vitro differentiated cells
1
primary cell
Organ
23
liver
10
blood
10
bodily fluid
3
spleen
2
connective tissue
1
epithelium
Project
39
AMP
Genome assembly (visualization)
41
hg19
39
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
12
inconsistent control read length
6
inconsistent control run_type
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
cell line
HepG2
20
GM12878
10
tissue
spleen
3
liver
2
in vitro differentiated cells
adipocyte
2
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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